Databases available for BLAST Batch search at CIAT

Peptide Sequence Databases

NR Generic Peptide

Non-Redundant Protein sequence database with entries from GenPept, Swissprot, PIR, PDF, PDB, and NCBI RefSeq

SWISSPROT Generic

Swiss-Prot protein sequence databases (last major update), its parent database is nr.

YEAST.AA

Yeast (Saccharomyces cerevisiae) Protein sequences. Protein translations from Yeast genome annotation

E. coli

E. coli genomic CDS translations

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Nucleotide Sequence Databases

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NT Generic Nucleotide

nucleotide sequence database, with entries from all traditional divisions of GenBank, EMBL, and DDBJ excluding bulk divisions (gss, sts, pat, est, and htg divisions. wgs entries are also excluded. Not non-redundant.

EST Generic

Volumes of the formatted est database from the EST division of GenBank, EMBL, and DDBJ

STS Generic

Sequences from the STS division of GenBank, EMBL, and DDBJ

HTGS Generic

Volumes of htgs database with entries from HTG division of GenBank, EMBL, and DDBJ

YEAST.NT Generic

Yeast (Saccharomyces cerevisiae) genomic Nucleotide sequences;Yeast genomic Sequences.

ECOLI.NT Generic

Escherichia coli K-12 genomic sequences

PDBNT Generic

Nucleotide sequences from pdb nucleic acid structures. They are NOT the protein coding sequences for the corresponding pdbaa entries.

VECTOR Generic

Vector sequence database For vector contamination screening, use the UniVec database from: ftp://ftp.ncbi.nih.gov/pub/UniVec/

gss

Genome Survey Sequence, includes single-pass genomic data, exon-trapped sequences, and Alu PCR sequences.